PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15685_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 402aa    MW: 44849.6 Da    PI: 4.5833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15685_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19129178255
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  cra_locus_15685_iso_1_len_1930_ver_3 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178
                                           89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-29128185IPR001471AP2/ERF domain
PROSITE profilePS5103223.657129186IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-21129185IPR016177DNA-binding domain
PfamPF008471.1E-12129178IPR001471AP2/ERF domain
CDDcd000185.14E-33129185No hitNo description
SMARTSM003803.9E-38129192IPR001471AP2/ERF domain
PRINTSPR003674.8E-10130141IPR001471AP2/ERF domain
PRINTSPR003674.8E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDHHSLLCPV KYTEHRSFTK KLTKSSSSIK TKKSFPVIPK TVRISVTDPD ATDSSSDEED  60
ELFGRQRVKR YINEIKIQAV RYNLINNNTT NGSHLPKKRV TTPTHDSLLH QAKQRPTKVA  120
KETVGNVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD  180
ALTNFITPPA KEKPVPSVSG YESGEESRNN LSSPTSVLRF RSSQSSEETE PTQSRSEPVQ  240
DEDNNSCPPP SCPSVVVVVE EDETTTFAAV EECQGETCTV PDYSNEYMPM DVPFLDNFFN  300
FELPPEQIPF EDTPVSTTFS NDFGGSMSLF DDDVVQHSSS SSATAAAALA LCSSDLSSDV  360
FFEDFKESSS SFQDLPSLEL DVGDYFQDNN NDFACFDTLL AI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21128185159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596437.11e-136PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_016445500.11e-136PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A068U9611e-133A0A068U961_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000060411e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126